Skip to contents

Data Keys for the Animal Import Example

Source: R/data_imports.r
imports_data_keys.Rd

A data-key specification describing the columns and identifying variables associated with each source dataset in the animal-import example. These keys allow mcmodule to associate input parameters with the appropriate model variates.

Usage

imports_data_keys

Format

A named list with three components:

animal_imports

A list containing cols, the columns provided by animal_imports, and keys, with origin as the identifying variable.

prevalence_region

A list containing cols, the columns provided by prevalence_region, and keys, with pathogen and origin as the identifying variables.

test_sensitivity

A list containing cols, the columns provided by test_sensitivity, and keys, with pathogen as the identifying variable.

Source

Created for the illustrative animal-import example.

See also

imports_data, imports_mctable, imports_exp, eval_module()

Examples

imports_data_keys
#> $animal_imports
#> $animal_imports$cols
#> [1] "origin"         "farms_n"        "animals_n_mean" "animals_n_sd"  
#> 
#> $animal_imports$keys
#> [1] "origin"
#> 
#> 
#> $prevalence_region
#> $prevalence_region$cols
#> [1] "pathogen"    "origin"      "h_prev_min"  "h_prev_max"  "w_prev_min" 
#> [6] "w_prev_max"  "test_origin"
#> 
#> $prevalence_region$keys
#> [1] "pathogen" "origin"  
#> 
#> 
#> $test_sensitivity
#> $test_sensitivity$cols
#> [1] "pathogen"        "test_sensi_min"  "test_sensi_mode" "test_sensi_max" 
#> 
#> $test_sensitivity$keys
#> [1] "pathogen"
#> 
#> 
imports_data_keys$prevalence_region$keys
#> [1] "pathogen" "origin"